Oryza sativa was domesticated from the wild grass Oryza rufipogon roughly 10,000–14,000 years ago. The two main subspecies of rice – indica (prevalent in tropical regions) and japonica (prevalent in the subtropical and temperate regions of East Asia) – are not believed to have been derived from independent domestication events. Another cultivated species, O. glaberrima, was domesticated much later in West Africa.

Recent genetic evidence show that all forms of Asian rice, both indica and japonica, come from a single domestication event that occurred 8,200–13,500 years ago in the Pearl River valley region of China.

In China, extensive archeological evidence points to the middle Yangtze and upper Huai rivers as the two earliest places of O. sativa cultivation in the country. Rice and farming implements dating back at least 8,000 years have been found. Cultivation spread down these rivers over the following 2,000 years.

Puddling the soil – turning it to mud to break it down and prevent too much water percolating away – and transplanting seedlings were likely refined in China. Both operations became integral parts of rice farming and remain widely practiced to this day. With the development of puddling and transplanting, rice became truly domesticated.

Movement to western India and south to Sri Lanka was also accomplished very early. Rice was a major crop in Sri Lanka as early as 1000 B.C. The crop may well have been introduced to Greece and the neighboring areas of the Mediterranean by returning members of Alexander the Great’s expedition to India around 344-324 B.C. From a center in Greece and Sicily, rice spread gradually throughout southern Europe and to a few locations in northern Africa.

As a result of Europe’s great Age of Exploration, new lands to the west became available for exploitation. Rice cultivation was introduced to the New World by early European settlers. The Portuguese carried it to Brazil and the Spanish introduced its cultivation to several locations in Central and South America. The first record for North America dates from 1685, when the crop was produced on the coastal lowlands and islands of what is now South Carolina. It is thought that slaves from West Africa who were transported to the Carolinas in the mid-18th century introduced the complex agricultural technology needed to grow rice. Their labor then insured a flourishing rice industry. By the 20th century, rice was produced in California’s Sacramento Valley. The introduction into California corresponded almost exactly with the timing of the first successful crop in Australia’s New South Wales.

Based on archeological evidence, rice was believed to have first been domesticated in the region of the Yangtze River valley in China. Morphological studies of rice phytoliths from the Diaotonghuan archaeological site clearly show the transition from the collection of wild rice to the cultivation of domesticated rice. The large number of wild rice phytoliths at the Diaotonghuan level dating from 12,000–11,000 BP indicates that wild rice collection was part of the local means of subsistence. Changes in the morphology of Diaotonghuan phytoliths dating from 10,000–8,000 BP show that rice had by this time been domesticated. Soon afterwards the two major varieties of indica and japonica rice were being grown in Central China. In the late 3rd millennium BC, there was a rapid expansion of rice cultivation into mainland Southeast Asia and westwards across India and Nepal.

In 2003, Korean archaeologists claimed to have discovered the world's oldest domesticated rice. Their 15,000 year old age challenges the accepted view that rice cultivation originated in China about 12,000 years ago. These findings were received by academia with strong skepticism, and the results and their publicizing has been cited as being driven by a combination of nationalist and regional interests.In 2011, a combined effort by the Stanford University, New York University, Washington University in St. Louis, and Purdue University has provided the strongest evidence yet that there is only one single origin of domesticated rice, in the Yangtze Valley of China.

The earliest remains of the grain in the Indian subcontinent have been found in the Indo-Gangetic Plain and date from 7000–6000 BC though the earliest widely accepted date for cultivated rice is placed at around 3000–2500 BC with findings in regions belonging to the Indus Valley Civilization. Perennial wild rices still grow in Assam and Nepal. It seems to have appeared around 1400 BC in southern India after its domestication in the northern plains. It then spread to all the fertile alluvial plains watered by rivers. Cultivation and cooking methods are thought to have spread to the west rapidly and by medieval times, southern Europe saw the introduction of rice as a hearty grain.

O. sativa was recovered from a grave at Susa in Iran (dated to the 1st century AD) at one end of the ancient world, another domestication of rice in South Asia.

Today, the majority of all rice produced comes from China, India, Indonesia, Pakistan, Bangladesh, Vietnam, Thailand, Myanmar, Philippines, and Japan. Asian farmers still account for 92% of the world's total rice production.

African rice has been cultivated for 3500 years. Between 1500 and 800 BC, Oryza glaberrima propagated from its original centre, the Niger River delta, and extended to Senegal. However, it never developed far from its original region. Its cultivation even declined in favour of the Asian species, which was introduced to East Africa early in the common era and spread westward. African rice helped Africa conquer its famine of 1203.

Rice was grown in some areas of southern Iraq. With the rise of Islam it moved north to Nisibin, the southern shores of the Caspian Sea and then beyond the Muslim world into the valley of Volga. In Egypt, rice is mainly grown in the Nile Delta. In Palestine, rice came to be grown in the Jordan Valley. Rice is also grown in Yemen.

The Moors brought Asiatic rice to the Iberian Peninsula in the 10th century. Records indicate it was grown in Valencia and Majorca. In Majorca, rice cultivation seems to have stopped after the Christian conquest, although historians are not certain.

Muslims also brought rice to Sicily, where it was an important crop long before it is noted in the plain of Pisa (1468) or in the Lombard plain (1475), where its cultivation was promoted by Ludovico Sforza, Duke of Milan, and demonstrated in his model farms.

After the 15th century, rice spread throughout Italy and then France, later propagating to all the continents during the age of European exploration.The Ottomans introduced rice to the Balkans.

Rice is not native to the Americas but was introduced to Latin America and the Caribbean by European colonizers at an early date with Spanish colonizers introducing Asian rice to Mexico in the 1520s at Veracruz and the Portuguese and their African slaves introducing it at about the same time to Colonial Brazil. Recent scholarship suggests that enslaved Africans played an active role in the establishment of rice in the New World and that African rice was an important crop from an early period. Varieties of rice and bean dishes that were a staple dish along the peoples of West Africa remained a staple among their descendants subjected to slavery in the Spanish New World colonies, Brazil and elsewhere in the Americas.

The Native Americans of what is now the Eastern United States may have practiced extensive agriculture with forms of wild rice. (References to wild rice in the Americas are to the unrelated Zizania palustris.)

In the United States, colonial South Carolina and Georgia grew and amassed great wealth from the Slavery labor obtained from the Senegambia area of West Africa and from coastal Sierra Leone. At the port of Charleston, through which 40% of all American slave imports passed, slaves from this region of Africa brought the highest prices, in recognition of their prior knowledge of rice culture, which was put to use on the many rice plantations around Georgetown, Charleston, and Savannah. From the enslaved Africans, plantation owners learned how to dyke the marshes and periodically flood the fields. At first the rice was milled by hand with wooden paddles, then winnowed in sweetgrass baskets (the making of which was another skill brought by slaves from Africa). The invention of the rice mill increased profitability of the crop, and the addition of water power for the mills in 1787 by millwright Jonathan Lucas was another step forward. Rice culture in the southeastern U.S. became less profitable with the loss of slave labor after the American Civil War, and it finally died out just after the turn of the 20th century. Today, people can visit the only remaining rice plantation in South Carolina that still has the original winnowing barn and rice mill from the mid-19th century at the historic Mansfield Plantation in Georgetown, South Carolina. The predominant strain of rice in the Carolinas was from Africa and was known as "Carolina Gold." The cultivar has been preserved and there are current attempts to reintroduce it as a commercially grown crop.

In the southern United States, rice has been grown in southern Arkansas, Louisiana, and east Texas since the mid-19th century. Many Cajun farmers grew rice in wet marshes and low lying prairies where they could also farm crayfish when the fields were flooded. In recent years rice production has risen in North America, especially in the Mississippi River Delta areas in the states of Arkansas and Mississippi.

Rice cultivation began in California during the California Gold Rush, when an estimated 40,000 Chinese laborers immigrated to the state and grew small amounts of the grain for their own consumption. However, commercial production began only in 1912 in the town of Richvale in Butte County. By 2006, California produced the second largest rice crop in the United States, after Arkansas, with production concentrated in six counties north of Sacramento. Unlike the Mississippi Delta region, California's production is dominated by short- and medium-grain japonica varieties, including cultivars developed for the local climate such as Calrose, which makes up as much as 85% of the state's crop.

More than 100 varieties of rice are commercially produced primarily in six states (Arkansas, Texas, Louisiana, Mississippi, Missouri, and California) in the U.S. According to estimates for the 2006 crop year, rice production in the U.S. is valued at $1.88 billion, approximately half of which is expected to be exported. The U.S. provides about 12% of world rice trade. The majority of domestic utilization of U.S. rice is direct food use (58%), while 16% is used in each of processed foods and beer. The remaining 10% is found in pet food.

Rice was one of the earliest crops planted in Australia by British settlers, who had experience with rice plantations in the Americas and the subcontinent.

Although attempts to grow rice in the well-watered north of Australia have been made for many years, they have consistently failed because of inherent iron and manganese toxicities in the soils and destruction by pests.

In the 1920s it was seen as a possible irrigation crop on soils within the Murray-Darling Basin that were too heavy for the cultivation of fruit and too infertile for wheat.

Because irrigation water, despite the extremely low runoff of temperate Australia, was (and remains) very cheap, the growing of rice was taken up by agricultural groups over the following decades. Californian varieties of rice were found suitable for the climate in the Riverina, and the first mill opened at Leeton in 1951.

Even before this Australia's rice production greatly exceeded local needs, and rice exports to Japan have become a major source of foreign currency. Above-average rainfall from the 1950s to the middle 1990s encouraged the expansion of the Riverina rice industry, but its prodigious water use in a practically waterless region began to attract the attention of environmental scientists. These became severely concerned with declining flow in the Snowy River and the lower Murray River.

Although rice growing in Australia is highly profitable due to the cheapness of land, several recent years of severe drought have led many to call for its elimination because of its effects on extremely fragile aquatic ecosystems. The Australian rice industry is somewhat opportunistic, with the area planted varying significantly from season to season depending on water allocations in the Murray and Murrumbidgee irrigation regions.